The Church runs the following medical and ministerial institutions.
The LEPROSY HOSPITAL located at EKPENE OBOM in Akwa Ibom State. The Hospital was established in 1933.

She also runs the HOLLEY MEMORIAL HOSPITAL, OCHADAMU in Kogi State, Nigeria. The 148-bed capacity hospital was founded in 1949. Rev. Abraham J. Akoh is the Administrator of the hospital.

There are three institutions for the training of ministers and missionaries.

SAMUEL BILL THEOLOGICAL COLLEGE, (SBTC), ABAK, Akwa Ibom State was established in 1941. The College runs courses for the award of Diploma, Higher Diploma and Bachelor Degree in different fields of ministerial studies. The rector of the college is Rev. V. I. Philips.

PETER ACHIMUGU COLLEGE OF THEOLOGY, (PACT) was founded in 1960. The main campus is located at ANKPA, Kogi State, Nigeria. The institution runs courses in Ministerial Studies, Theology and Christian Religious Studies /Education leading to the award of Diploma, Higher Diploma, Bachelor and Post Graduate degrees. The Chairman of the Governing Council is Rev. (Dr.) Abraham Ogwo and the Provost is Rev. (Dr.) J. B. Abbah. More information on the institution can be obtained on the website www.peterachimugucollegeoftheology.org.

WILLIAM WHEATLEY THEOLOGICAL COLLEGE, (WWTC) is located at OLOKO, Abia State, Nigeria. Courses in the college lead to the award of Diploma, Advanced Diploma and the Bachelor degree in Ministerial Studies. The Chairman of the Governing Council is Elder (Engr.) C. O. Wosu mni and the Provost is Rev. O. P. Jonah. Information on this institution can be found on its website, www.williamwheatleytheologicalcollge.org.

Area Conferences, Township Superintendencies, Districts and Local Churches run Nursery, Primary and Secondary Schools.